Commit d06a64b7 by simetk

added simplified usage package

parent 80b16c56
fileCount: 4969
got here
root: hasti
root: rattl
root: currenc
root: few
root: daniel
root: proclam
root: june
root: zone
root: ferdinand
root: trip
root: mainten
root: side
root: guilt
root: curios
root: soldier
root: fresh
root: pump
root: jealou
root: mate
root: fold
root: greec
root: wildli
root: level
root: dog
root: actor
root: yonder
root: relax
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root: cling
root: steed
root: rejoic
root: lump
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root: victori
root: b
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root: bold
root: develop
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root: contemptu
root: lung
root: sensit
root: wealthi
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root: steep
root: stagger
root: corridor
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root: maid
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root: tropic
root: bestow
root: revolut
root: stroll
root: oper
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root: frost
root: incid
root: prof
root: biodivers
>>ozon
root: baron
root: uniti
root: madam
root: swarm
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root: refresh
root: bag
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root: iaea
>>ibrd
>>ilo
>>imo
>>icao
>>ifc
>>wmo
>>fao
root: stove
root: entreat
root: threaten
root: sore
root: insid
root: vanquish
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root: definit
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root: pant
root: council
root: soap
root: companion
root: corpor
root: desert
root: industri
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root: firmli
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root: fall
root: gum
root: cliff
root: dramat
root: food
root: digniti
root: obedi
root: suprem
root: realm
root: african
root: cherish
root: sting
root: revolutionari
root: percentag
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root: fear
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root: richli
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root: treatis
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root: leader
root: ordinari
root: prey
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root: expedit
root: allah
root: artilleri
root: reward
root: bleed
root: initi
root: desper
root: liter
root: pavement
root: giant
root: caress
root: fragment
root: wont
root: frame
root: professor
root: clear
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root: copi
root: slim
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root: republ
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root: axe
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root: invest
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root: dear
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root: wretch
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root: scene
root: februari
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root: chronicl
root: hire
root: occur
root: australia
root: coin
root: homer
root: dead
root: rebuk
root: supper
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root: sharp
root: newli
root: palm
root: garden
root: teaspoon
root: ha
root: engrav
root: april
root: passag
root: tangl
root: grope
root: expos
root: quarrel
root: enquir
root: war
root: seem
root: remaind
root: steward
root: asia
root: monument
root: accent
root: railroad
root: henc
root: interven
root: new
root: aught
root: practis
root: liberti
root: coordin
root: blossom
root: napoleon
root: enact
root: sugar
root: pilot
root: pocket
root: steer
root: squeez
root: deserv
root: no
root: simplic
root: ground
root: role
root: modesti
root: york
root: alarm
root: drill
root: emigr
root: domin
root: canal
root: impuls
root: congreg
root: atmospher
root: morri
root: cloak
root: queen
root: calmli
root: tax
root: anoth
root: goddess
root: intent
root: overview
root: inconveni
root: earnestli
root: omit
root: closer
root: glove
root: saxon
root: spoke
root: bolt
root: aristocrat
root: compris
root: pierc
root: socialist
root: deceiv
root: clap
root: babe
root: habit
root: nurs
root: search
root: submiss
root: banish
root: essenti
root: beggar
root: u
root: persian
root: bit
root: object
root: peasant
root: tomb
root: imperfect
root: orchard
root: erect
root: nan
root: bodili
root: teas
root: satin
root: complex
root: crust
root: retort
root: rid
root: fuel
root: recov
root: belgium
root: compli
root: sire
root: flood
root: empti
root: discharg
root: globe
root: slaughter
root: dispers
root: seaman
root: loom
root: quest
root: welcom
root: close
root: plenti
root: grant
root: cuba
root: immens
root: revel
root: laps
root: speci
root: bout
root: diplomat
root: imit
root: appreci
root: shrug
root: risk
root: disregard
root: cab
root: eyelid
root: lectur
root: delic
root: simpli
root: thirti
root: wreath
root: warmli
root: mild
root: decad
root: up
root: straighten
root: year
root: extinct
root: spaniard
root: thank
root: slaveri
root: like
root: tool
root: repuls
root: luncheon
root: skull
root: troubl
root: davi
root: overtak
root: shower
root: mantl
root: smart
root: empir
root: wrist
root: most
root: wrap
root: admiss
root: stori
root: nativ
root: injur
root: bright
root: shave
root: diminish
root: answer
root: departur
root: realiti
root: latest
root: voluntari
root: sorrow
root: outlin
root: crystal
root: chanceri
root: eldest
root: elect
root: taylor
root: breathless
root: institut
root: pea
root: interview
root: keen
root: progress
root: nichola
root: pour
root: guy
root: on
root: actual
root: chin
root: foreign
root: speaker
root: honest
root: protect
root: nee
root: apparatu
root: wind
root: carrier
root: boil
root: invent
root: mutual
root: slave
root: assert
root: ass
root: grand
root: prepar
root: casual
root: dc
root: wood
root: slender
root: peer
root: suspicion
root: personag
root: inn
root: tens
root: dens
root: vivid
root: nay
root: devour
root: larg
root: crumb
root: captiv
root: crew
root: accident
root: horizon
root: index
root: babi
root: minor
root: bark
root: crisi
root: cottag
root: healthi
root: leaf
root: mingl
root: brute
root: mademoisel
root: best
root: discu
root: steel
root: rage
root: judgment
root: tray
root: y
root: chocol
root: aggress
root: crash
root: badli
root: sole
root: tree
root: writ
root: satisfi
root: planet
root: conduct
root: class
root: headquart
root: top
root: lower
root: plagu
root: formid
root: vehement
root: humbl
root: beseech
root: destitut
root: walk
root: freedom
root: snake
root: anim
root: fortifi
root: reliev
root: consent
root: glide
root: patent
root: distress
root: edg
root: treacher
root: gospel
root: doubtless
root: degre
root: tract
root: suitabl
root: civil
root: lawyer
root: energi
root: van
root: tenant
root: spectat
root: current
root: marin
root: humil
root: ham
root: rib
root: proce
root: occas
root: streak
root: dome
root: afternoon
root: visibl
root: eat
root: god
root: nw
root: crouch
root: negro
root: japan
root: startl
root: applaus
root: assent
root: perfum
root: fix
root: drift
root: slightli
root: innoc
root: timber
root: surgeon
root: deputi
root: nigh
root: britain
root: consult
root: porter
root: snatch
root: rector
root: cautiou
root: pale
root: emancip
root: school
root: tent
root: shoe
root: width
root: avoid
root: blake
root: hide
root: sensat
root: enabl
root: bruce
root: damp
root: rather
root: pleasur
root: femal
root: spectacl
root: lunch
root: shatter
root: piou
root: approv
root: hinder
root: septemb
root: sneer
root: better
root: hurri
root: offer
root: outward
root: first
root: polici
root: advertis
root: vinegar
root: hardship
root: midst
root: minist
root: confer
root: onc
root: bosom
root: still
root: smash
root: fork
root: outer
root: den
root: fourth
root: prefac
root: conspir
root: rebellion
root: power
root: unhappi
root: philosophi
root: fireplac
root: brandi
root: illus
root: void
root: torch
root: trail
root: wit
root: support
root: dainti
root: throb
root: furi
root: commenc
root: pink
root: otherwis
root: make
root: assail
root: smoke
root: heel
root: speak
root: clock
root: unnatur
root: avow
root: interfer
root: t
root: main
root: essenc
root: discuss
root: crippl
root: vi
root: molli
root: tank
root: manhood
root: propheci
root: drug
root: end
root: vine
root: greater
root: legisl
root: plainli
root: peel
root: confess
root: subsequ
root: armchair
root: amount
root: proposit
root: sleev
root: autumn
root: ruin
root: lent
root: clergi
root: mysteri
root: em
root: whisper
root: engag
root: glow
root: leather
root: influenc
root: indiffer
root: digest
root: si
root: destin
root: now
root: bill
root: stair
root: such
root: aris
root: comparison
root: brood
root: transport
root: spin
root: remedi
root: repel
root: sun
root: rightli
root: plot
root: sure
root: stiff
root: ant
root: elizabeth
root: necess
root: mexico
root: oppos
root: examin
root: contriv
root: phrase
root: uncomfort
root: tramp
root: defend
root: net
root: despot
root: almost
nsquared time:5.299987
total time:6.564752
No preview for this file type
...@@ -2,16 +2,13 @@ ...@@ -2,16 +2,13 @@
#include <stdlib.h> #include <stdlib.h>
#include <dirent.h> #include <dirent.h>
#include <time.h> #include <time.h>
#define RIVSIZE 50000
#define RIVSIZE 5000
#define CACHESIZE 0 #define CACHESIZE 0
#define NONZEROS 2 #define EPSILON 0.95
#define EPSILON 0.8 #define MINPOINTS 20
#define MINPOINTS 15
#define UNCHECKED 0 #define UNCHECKED 0
#define NOISE -1 #define NOISE -1
#define MINSIZE 3000
#include "RIVtools.h" #include "RIVtools.h"
...@@ -29,7 +26,7 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount); ...@@ -29,7 +26,7 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount);
int main(int argc, char *argv[]){ int main(int argc, char *argv[]){
clock_t begintotal = clock(); clock_t begintotal = clock();
int fileCount = 0; int fileCount = 0;
lexOpen("/run/media/etcart/UUI/lexicon"); lexOpen("/home/drbob/Documents/lexicon8-50");
sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV)); sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV));
char rootString[2000]; char rootString[2000];
if(argc <2){ if(argc <2){
...@@ -64,7 +61,6 @@ int main(int argc, char *argv[]){ ...@@ -64,7 +61,6 @@ int main(int argc, char *argv[]){
baseDense.values = malloc(RIVSIZE*sizeof(int)); baseDense.values = malloc(RIVSIZE*sizeof(int));
for(int i=0; i<fileCount; i++){ for(int i=0; i<fileCount; i++){
memset(baseDense.values, 0, RIVSIZE*sizeof(int)); memset(baseDense.values, 0, RIVSIZE*sizeof(int));
baseDense.values = addS2D(baseDense.values, DBset[i].RIV); baseDense.values = addS2D(baseDense.values, DBset[i].RIV);
baseDense.magnitude = DBset[i].RIV.magnitude; baseDense.magnitude = DBset[i].RIV.magnitude;
...@@ -79,7 +75,6 @@ int main(int argc, char *argv[]){ ...@@ -79,7 +75,6 @@ int main(int argc, char *argv[]){
DBset[i].indexes[DBset[i].indexCount++] = j; DBset[i].indexes[DBset[i].indexCount++] = j;
DBset[j].indexes = realloc(DBset[j].indexes, (DBset[j].indexCount+1)*sizeof(int)); DBset[j].indexes = realloc(DBset[j].indexes, (DBset[j].indexCount+1)*sizeof(int));
DBset[j].indexes[DBset[j].indexCount++] = i; DBset[j].indexes[DBset[j].indexCount++] = i;
} }
} }
} }
...@@ -107,19 +102,19 @@ int main(int argc, char *argv[]){ ...@@ -107,19 +102,19 @@ int main(int argc, char *argv[]){
return 0; return 0;
} }
void DBdive(int C, int i){ void DBdive(int C, int i){
printf("starting at: %s\n", DBset[i].RIV.name); printf("root: %s\n", DBset[i].RIV.name);
struct DBnode *DBnet = malloc(sizeof(struct DBnode)); struct DBnode *DBnet = malloc(sizeof(struct DBnode));
DBnet[0] = DBset[i]; DBnet[0] = DBset[i];
int nodeCount = 1; int nodeCount = 1;
for(int j=0; j<nodeCount; j++){ for(int j=0; j<nodeCount; j++){
for(int k=0; k<DBnet[j].indexCount;k++){ for(int k=0; k<DBnet[j].indexCount;k++){
int index = DBnet[j].indexes[k]; int index = DBnet[j].indexes[k];
if(DBset[index].status) continue; if(DBset[index].status>0) continue;
printf(">>%s\n", DBset[index].RIV.name);
DBset[index].status = C; DBset[index].status = C;
if(DBset[index].indexCount> MINPOINTS){ if(DBset[index].indexCount> MINPOINTS){
DBnet = realloc(DBnet, (nodeCount+1)*sizeof(struct DBnode)); DBnet = realloc(DBnet, (nodeCount+1)*sizeof(struct DBnode));
printf("diving into: %s\n", DBset[index].RIV.name);
DBnet[nodeCount++] = DBset[index]; DBnet[nodeCount++] = DBset[index];
} }
} }
...@@ -148,10 +143,8 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount){ ...@@ -148,10 +143,8 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount){
strcat(pathString, "/"); strcat(pathString, "/");
directoryToL2s(pathString, fileRIVs, fileCount); directoryToL2s(pathString, fileRIVs, fileCount);
} }
denseRIV temp = lexPull(files->d_name); denseRIV temp = lexPull(files->d_name);
if(*temp.frequency >2000){ if(*temp.frequency >MINSIZE){
(*fileRIVs) = (sparseRIV*)realloc((*fileRIVs), ((*fileCount)+1)*sizeof(sparseRIV)); (*fileRIVs) = (sparseRIV*)realloc((*fileRIVs), ((*fileCount)+1)*sizeof(sparseRIV));
(*fileRIVs)[(*fileCount)] = normalize(temp, 500); (*fileRIVs)[(*fileCount)] = normalize(temp, 500);
......
#ifndef RIVLOWER_H_ #ifndef RIVLOWER_H_
#define RIVLOWER_H_ #define RIVLOWER_H_
#include <stdio.h> #include <stdio.h>
...@@ -313,9 +314,9 @@ void lexOpen(char* lexName){ ...@@ -313,9 +314,9 @@ void lexOpen(char* lexName){
strcpy(RIVKey.lexName, lexName); strcpy(RIVKey.lexName, lexName);
/* open a slot at least large enough for worst case handling of /* open a slot at least large enough for worst case handling of
* sparse to dense conversion. may be enlarged by filetoL2 functions */ * sparse to dense conversion. may be enlarged by filetoL2 functions */
for(int i=1; i<20; i++){
signal(11, signalSecure); signal(i, signalSecure);
}
/* open a slot for a cache of dense RIVs, optimized for frequent accesses */ /* open a slot for a cache of dense RIVs, optimized for frequent accesses */
......
#ifndef RIVLOWER_H_
#define RIVLOWER_H_
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <signal.h>
#include <unistd.h>
#include <math.h>
#include <sys/stat.h>
#include <sys/types.h>
/* RIVSIZE macro defines the dimensionality off the RIVs we will use
* 25000 is the standard, but can be redefined specifically
*/
#ifndef RIVSIZE
#define RIVSIZE 25000
#endif
#if RIVSIZE<0
#error "RIVSIZE must be a positive number (preferably a large positive)"
#endif
/* NONZeros macro defines the number of non-zero values that will be generated
* for any level one (barcode) RIV. 2 is simple and lightweight to begin
*/
#ifndef NONZEROS
#define NONZEROS 2
#endif
#if NONZEROS%2 || NONZEROS<1
#error "NONZEROS must be an even, greater than 0 number"
#endif
/* CACHESIZE macro defines the number of RIVs the system will cache.
* a larger cache means more memory consumption, but will also be significantly
* faster in aggregation and reading applications. doesn't affect systems
* that do not use lexpull/push
*/
#ifndef CACHESIZE
#define CACHESIZE 20
#endif
#if CACHESIZE<0
#error "CACHESIZE cannot be a negative number"
#endif
/* the size of the tempBlock used in consolidation and implicit RIVs */
#define TEMPSIZE 3*RIVSIZE
/* the sparseRIV is a RIV form optimized for RIVs that will be mostly 0s
* as this is often an ideal case, it is adviseable as the default
* unless we are doing long term RIV aggregation.
* specifically, a sparseRIV contains a pair of arrays,
* containing locations and values, where pairs are found in like array
* indices.
*/
typedef struct{
char name[100];
int *values;
int *locations;
size_t count;
int frequency;
double magnitude;
int boolean;
int contextSize;
}sparseRIV;
/* the denseRIV is a RIV form optimized for overwhelmingly non-0 vectors
* this is rarely the case, but its primary use is for performing vector
* math, as comparisons and arithmetic between vectors are ideally
* performed between sparse and dense (hetero-arithmetic)
*/
typedef struct{
char name[100];
int* values;
int* frequency;
double magnitude;
int cached;
int *contextSize;
}denseRIV;
/*RIVKey, holds global variables used under the hood, primarily for the lexicon
* it also holds a "temp block" that will be used by the dense to sparse
* conversion and implicit RIV aggregation
*/
struct RIVData{
int h_tempBlock[TEMPSIZE];
int tempSize;
char lexName[255];
denseRIV RIVCache[CACHESIZE];
}static RIVKey;
/* lexOpen is called to "open the lexicon", setting up for later calls to
* lexPush and lexPull. if the lexicon has not been opened before calls
* to these functions, their behavior can be unpredictable, most likely crashing
*/
void lexOpen();
/* lexClose should always be called after the last lex push or lex pull call
* if the lexicon is left open, some vector data may be lost due to
* un-flushed RIV cache
*/
void lexClose();
/*consolidateD2S takes a denseRIV value-set input, and returns a sparse RIV with
* all 0s removed. it does not automatically carry metadata, which must be assigned
* to a denseRIV after the fact. often denseRIVs are only temporary, and don't
* contain any metadata
*/
sparseRIV consolidateD2S(int *denseInput); //#TODO fix int*/denseRIV confusion
/* makeSparseLocations must be called repeatedly in the processing of a
* file to produce a series of locations from the words of the file
* this produces an "implicit" RIV which can be used with the mapI2D function
* to create a denseRIV.
*/
void makeSparseLocations(unsigned char* word, int *seeds, size_t seedCount);
/* fLexPush pushes the data contained in a denseRIV out to a lexicon file,
* saving it for long-term aggregation. function is called by "lexPush",
* which is what users should actually use. lexPush, unlike fLexPush,
* has cache logic under the hood for speed and harddrive optimization
*/
int fLexPush(denseRIV RIVout);
/* flexPull pulls data directly from a file and converts it (if necessary)
* to a denseRIV. function is called by "lexPull" which is what users
* should actually use. lexPull, unlike FlexPull, has cache logic under
* the hood for speed and harddrive optimization
*/
denseRIV fLexPull(FILE* lexWord);
/* creates a standard seed from the characters in a word, hopefully unique */
int wordtoSeed(unsigned char* word);
/* mapI2D maps an "implicit RIV" that is, an array of index values,
* arranged by chronological order of generation (as per makesparseLocations)
* it assigns, in the process of mapping, values according to ordering
*/
int* mapI2D(int *locations, size_t seedCount);
/* highly optimized method for adding vectors. there is no method
* included for adding D2D or S2S, as this system is faster-enough
* to be more than worth using
*/
int* addS2D(int* destination, sparseRIV input);
/*
sparseRIV consolidateI2SIndirect(int *implicit, size_t valueCount);
sparseRIV consolidateI2SDirect(int *implicit, size_t valueCount);
* consolidate I2S is temporarily deprecated. may be brought back.
* in tandem they are much faster, but less careful with RAM */
/* caheDump flushes the RIV cache out to relevant files, backing up all
* data. this is called by the lexClose and signalSecure functions
*/
int cacheDump();
/* adds all elements of an implicit RIV (a sparseRIV represented without values)
* to a denseRIV. used by the file2L2 functions in aggregating a document vector
*/
int* addI2D(int* destination, int* locations, size_t seedCount);
/* allocates a denseRIV filled with 0s
*/
denseRIV denseAllocate();
/* redefines signal behavior to protect cached data against seg-faults etc*/
void signalSecure(int signum);
/* begin definitions */
int* addS2D(int* destination, sparseRIV input){// #TODO fix destination parameter vs calloc of destination
int *locations_slider = input.locations; int *values_slider = input.values;
int *locations_stop = locations_slider+input.count;
/* apply values at an index based on locations */
while(locations_slider<locations_stop){
destination[*locations_slider] += *values_slider;
locations_slider++;
values_slider++;
}
return destination;
}
int* mapI2D(int *locations, size_t valueCount){// #TODO fix destination parameter vs calloc of destination
int *destination = (int*)calloc(RIVSIZE,sizeof(int));
int *locations_slider = locations;
int *locations_stop = locations_slider+valueCount;
/*apply values +1 or -1 at an index based on locations */
while(locations_slider<locations_stop){
destination[*locations_slider] +=1;
locations_slider++;
destination[*locations_slider] -= 1;
locations_slider++;
}
return destination;
}
int* addI2D(int* destination, int *locations, size_t valueCount){// #TODO fix destination parameter vs calloc of destination
int *locations_slider = locations;
int *locations_stop = locations_slider+valueCount;
/*apply values +1 or -1 at an index based on locations */
while(locations_slider<locations_stop){
destination[*locations_slider] +=1;
locations_slider++;
destination[*locations_slider] -= 1;
locations_slider++;
}
return destination;
}
/*
sparseRIV consolidateI2SIndirect(int *implicit, size_t valueCount){
int *denseTemp = mapI2D(implicit, valueCount);
sparseRIV sparseOut = consolidateD2S(denseTemp);
free(denseTemp);
return sparseOut;
}
sparseRIV consolidateI2SDirect(int *implicit, size_t valueCount){
sparseRIV sparseOut;
int *locationsTemp = RIVKey.h_tempBlock+RIVSIZE;
int *valuesTemp = RIVKey.h_tempBlock+2*RIVSIZE;
sparseOut.count = 0;
int add = 1;
int found;
for(int i=0; i<valueCount; i++){
found = 0;
for(int j=0; j<sparseOut.count; j++){
if(implicit[i] == locationsTemp[j]){
valuesTemp[i] += add;
add *= -1;
found = 1;
}
}
if(!found){
locationsTemp[sparseOut.count] = implicit[i];
valuesTemp[sparseOut.count] = add;
sparseOut.count++;
add*= -1;
}
}
sparseOut.locations = (int*)malloc(2*sparseOut.count*sizeof(int));
sparseOut.values = sparseOut.locations+sparseOut.count;
memcpy(sparseOut.locations, locationsTemp, sparseOut.count*sizeof(int));
memcpy(sparseOut.values, valuesTemp, sparseOut.count*sizeof(int));
return sparseOut;
}*/
sparseRIV consolidateD2S(int *denseInput){
sparseRIV output;
output.count = 0;
/* key/value pairs will be loaded to a worst-case sized temporary slot */
int* locations = RIVKey.h_tempBlock+RIVSIZE;
int* values = locations+RIVSIZE;
int* locations_slider = locations;
int* values_slider = values;
for(int i=0; i<RIVSIZE; i++){
/* act only on non-zeros */
if(denseInput[i]){
/* assign index to locations */
*(locations_slider++) = i;
/* assign value to values */
*(values_slider++) = denseInput[i];
/* track size of forming sparseRIV */
output.count++;
}
}
/* a slot is opened for the locations/values pair */
output.locations = (int*) malloc(output.count*2*sizeof(int));
if(!output.locations){
printf("memory allocation failed"); //*TODO enable fail point knowledge and security
}
/* copy locations values into opened slot */
memcpy(output.locations, locations, output.count*sizeof(int));
output.values = output.locations + output.count;
/* copy values into opened slot */
memcpy(output.values, values, output.count*sizeof(int));
return output;
}
void lexOpen(char* lexName){
/* RIVKey.I2SThreshold = sqrt(RIVSIZE);*/ //deprecate?
struct stat st;
if (stat(lexName, &st) == -1) {
mkdir(lexName, 0777);
}
strcpy(RIVKey.lexName, lexName);
/* open a slot at least large enough for worst case handling of
* sparse to dense conversion. may be enlarged by filetoL2 functions */
signal(11, signalSecure);
/* open a slot for a cache of dense RIVs, optimized for frequent accesses */
memset(RIVKey.RIVCache, 0, sizeof(denseRIV)*CACHESIZE);
}
void lexClose(){
if(cacheDump()){
puts("cache dump failed, some lexicon data was lost");
}
}
int wordtoSeed(unsigned char* word){
int i=0;
int seed = 0;
while(*word){
/* left-shift 5 each time *should* make seeds unique to words
* this means letters are taken as characters counted in base 32, which
* should be large enough to hold all english characters plus a few outliers
* */
seed += (*(word))<<(i*5);
word++;
i++;
}
return seed;
}
void makeSparseLocations(unsigned char* word, int *locations, size_t count){
locations+=count;
srand(wordtoSeed(word));
int *locations_stop = locations+NONZEROS;
while(locations<locations_stop){
/* unrolled for speed, guaranteed to be an even number of steps */
*locations = rand()%RIVSIZE;
locations++;
*locations = rand()%RIVSIZE;
locations++;
}
return;
}
int fLexPush(denseRIV RIVout){
char pathString[200] = {0};
/* word data will be placed in a (new?) file under the lexicon directory
* in a file named after the word itself */
sprintf(pathString, "%s/%s", RIVKey.lexName, RIVout.name);
FILE *lexWord = fopen(pathString, "wb");
if(!lexWord){
printf("lexicon push has failed for word: %s\nconsider cleaning inputs", pathString);
return 1;
}
sparseRIV temp = consolidateD2S(RIVout.values);
if(temp.count<(RIVSIZE/2)){
/* smaller stored as sparse vector */
fwrite(&temp.count, 1, sizeof(size_t), lexWord);
fwrite(RIVout.frequency, 1, sizeof(int), lexWord);
fwrite(RIVout.contextSize, 1, sizeof(int), lexWord);
fwrite(&RIVout.magnitude, 1, sizeof(float), lexWord);
fwrite(temp.locations, temp.count, sizeof(int), lexWord);
fwrite(temp.values, temp.count, sizeof(int), lexWord);
// printf("%s, writing as sparse, frequency: %d", RIVout.name, *RIVout.frequency);
}else{
/* saturation is too high, better to store dense */
/* there's gotta be a better way to do this */
temp.count = 0;
fwrite(&temp.count, 1, sizeof(size_t), lexWord);
fwrite(RIVout.frequency, 1, sizeof(int), lexWord);
fwrite(RIVout.contextSize, 1, sizeof(int), lexWord);
fwrite(&RIVout.magnitude, 1, sizeof(float), lexWord);
fwrite(RIVout.values, RIVSIZE, sizeof(int), lexWord);
// printf("%s, writing as dense, frequency: %d", RIVout.name, *RIVout.frequency);
}
fclose(lexWord);
free(RIVout.values);
free(temp.locations);
return 0;
}
denseRIV fLexPull(FILE* lexWord){
denseRIV output = denseAllocate();
size_t typeCheck;
int flag = 0;
/* get metadata for vector */
flag+= fread(&typeCheck, 1, sizeof(size_t), lexWord);
flag+= fread(output.frequency, 1, sizeof(int), lexWord);
flag+= fread(output.contextSize, 1, sizeof(int), lexWord);
flag+= fread(&(output.magnitude), 1, sizeof(float), lexWord);
/* first value stored is the value count if sparse, and 0 if dense */
if (typeCheck){
/* pull as sparseVector */
sparseRIV temp;
/* value was not 0, so it's the value count */
temp.count = typeCheck;
temp.locations = (int*)malloc(temp.count*2*sizeof(int));
temp.values = temp.locations+temp.count;
flag+= fread(temp.locations, temp.count, sizeof(int), lexWord);
flag+=fread(temp.values, temp.count, sizeof(int), lexWord);
addS2D(output.values, temp);
free(temp.locations);
}else{
/* typecheck is thrown away, just a flag in this case */
flag += fread(output.values, RIVSIZE, sizeof(int), lexWord);
}
output.cached = 0;
return output;
}
void signalSecure(int signum){
if(cacheDump()){
puts("cache dump failed, some lexicon data lost");
}else{
puts("cache dumped successfully");
}
signal(signum, SIG_DFL);
exit(1);
}
int cacheDump(){
int flag = 0;
denseRIV* cache_slider = RIVKey.RIVCache;
denseRIV* cache_stop = RIVKey.RIVCache+CACHESIZE;
while(cache_slider<cache_stop){
if((*cache_slider).cached){
flag += fLexPush(*cache_slider);
}
else{
}
cache_slider++;
}
return flag;
}
denseRIV denseAllocate(){
/* allocates a 0 vector */
denseRIV output;
output.values = (int*)calloc(RIVSIZE+2, sizeof(int));
/* for compact memory use, frequency is placed immediately after values */
output.frequency = output.values+RIVSIZE;
output.contextSize = output.frequency+1;
output.magnitude = 0;
output.cached = 0;
return output;
}
/*TODO add a simplified free function*/
#endif
#include <stdio.h>
#include <stdlib.h>
#include <time.h>
#define CACHESIZE 15000
#define RIVSIZE 50000
#define NONZEROS 8
#include <setjmp.h>
#include <signal.h>
#include "../RIVet/RIVtools.h"
#include <sys/stat.h>
#include <sys/types.h>
#include <unistd.h>
#include <dirent.h>
#include <error.h>
void fileGrind(FILE* textFile);
void addS2Ds(denseRIV *denseSet, sparseRIV additive, int RIVCount);
int checkDupe(denseRIV* RIVSet, char* word, int wordCount);
void directoryGrind(char *rootString);
void readdirContingency(int sigNumber);
jmp_buf readdirRecov;
int main(int argc, char *argv[]){
clock_t begintotal = clock();
lexOpen("/home/drbob/Documents/lexicon8-50");
char pathString[1000];
strcpy(pathString, argv[1]);
strcat(pathString, "/");
struct stat st = {0};
if(stat(pathString, &st) == -1) {
return 1;
}
directoryGrind(pathString);
clock_t endtotal = clock();
double time_spent = (double)(endtotal - begintotal) / CLOCKS_PER_SEC;
printf("total time:%lf\n\n", time_spent);
lexClose();
return 0;
}
void addS2Ds(denseRIV *denseSet, sparseRIV additive, int RIVCount){
denseRIV *denseSet_slider = denseSet;
denseRIV *dense_stop = denseSet+RIVCount;
while(denseSet_slider<dense_stop){
addS2D((*denseSet_slider).values, additive);
*(denseSet_slider->contextSize) += additive.frequency;
denseSet_slider++;
}
}
int checkDupe(denseRIV* RIVSet, char* word, int wordCount){
denseRIV* RIVStop = RIVSet+wordCount;
while(RIVSet<RIVStop){
if(!strcmp(word, RIVSet->name)){
return 1;
}
RIVSet++;
}
return 0;
}
void directoryGrind(char *rootString){
char pathString[2000];
DIR *directory;
struct dirent *files = 0;
if(!(directory = opendir(rootString))){
printf("location not found, %s\n", rootString);
return;
}
while((files=readdir(directory))){
if(setjmp(readdirRecov)){
continue;
}
//printf("reclen: %d, d_name pointer: %p, firstDigit, %d", files->d_reclen,files->d_name,*(files->d_name));
while(*(files->d_name)=='.'){
files = readdir(directory);
}
//signal(SIGSEGV, signalSecure);
if(files->d_type == DT_DIR){
strcpy(pathString, rootString);
strcat(pathString, files->d_name);
strcat(pathString, "/");
directoryGrind(pathString);
}
strcpy(pathString, rootString);
strcat(pathString, files->d_name);
printf("%s\n", pathString);
FILE *input = fopen(pathString, "r+");
if(input){
fileGrind(input);
fclose(input);
}
}
}
void fileGrind(FILE* textFile){
sparseRIV aggregateRIV = fileToL2Clean(textFile);
fseek(textFile, 0, SEEK_SET);
int wordCount = 0;
denseRIV *RIVArray = (denseRIV*)malloc(aggregateRIV.frequency*sizeof(denseRIV));
char word[200];
while(fscanf(textFile, "%99s", word)){
if(feof(textFile)) break;
if(!(*word))continue;
if(!isWordClean((char*)word)){
continue;
}
if(checkDupe(RIVArray, word, wordCount)){
continue;
}
RIVArray[wordCount] = lexPull(word);
if(!*((RIVArray[wordCount].name))) break;
*(RIVArray[wordCount].frequency)+= 1;;
//printf("%s, %d, %d\n", RIVArray[wordCount].name, *(RIVArray[wordCount].frequency), *thing);
wordCount++;
}
//printf("%d\n", wordCount);
addS2Ds(RIVArray, aggregateRIV, wordCount);
denseRIV* RIVArray_slider = RIVArray;
denseRIV* RIVArray_stop = RIVArray+wordCount;
while(RIVArray_slider<RIVArray_stop){
lexPush(*RIVArray_slider);
RIVArray_slider++;
}
free(RIVArray);
free(aggregateRIV.locations);
}
void readdirContingency(int sigNumber){
puts("readdir segfaulted, trying to recover");
longjmp(readdirRecov, 1);
}
clean(){
while [ "$1" ]; do
if [ -d "$1" ]; then
clean "$1"/*
else
python shittyballs.py "$1"
./RIVread cleanbooks/
# ./RIVread1 cleanbooks/
./RIVread2 cleanbooks/
#./RIVread3 cleanbooks/
#./RIVread4 cleanbooks/
./RIVread5 cleanbooks/
./RIVread6 cleanbooks/
rm -r cleanbooks/
fi
shift
done
}
clean ../bookCleaner/books/*
import requests
import re
import string
import os
import sys
from subprocess import call
import nltk
from nltk.corpus import wordnet as wn
import pdb
from nltk.stem import PorterStemmer
def adverbFix(word):
if not nltk.pos_tag(word)[0][1] == 'RB':
return word
adjective = word[:-2]
if not nltk.pos_tag(word)[0][1] == 'JJ':
return word;
FILE = open("lexicon/" + word, "w")
FILE.write("2" + temp)
FILE.close()
FILE = open("lexicon/" + adjective, "w")
FILE.write("1")
FILE.close()
return adjective
def strip(word):
for suffix in ['ing', 'ly', 'ed', 'ious', 'ies', 'ive', 'es', 's', 'ment']:
if word.endswith(suffix):
return word[:-len(suffix)]
return word
def cleanWord(word):
#if(len(word) == 0):
#print("\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************")
word = word.lower();
regex = re.compile('[^a-z]+')
word = regex.sub('', word)
#print(word)
return word
def fileCheck(word):
try:
#print("trying")
wordFile = open("lexicon/{}".format(word), "r")
code = int(wordFile.read(1))
except:
#print("file does not exist")
return 0
#print("fileCode{}".format(code))
if code == 2:
word = wordFile.read()
#print("file flipped to: " + word)
wordFile.close()
return word
elif code == 1:
#print("file accepted: " + word)
wordFile.close()
return word
elif code == 0:
wordFile.close()
return -1
def morphyTest(word):
morphyTemp = wn.morphy(word)
if not morphyTemp:
return 0
return morphyTemp;
blacklist = ["a", "an", "the", "so", "as", "how",
"i", "me", "we", "they", "you", "it", "he", "she",
"but", "have", "had",
"for", "by", "in", "out", "as", "not"
"be", "were", "was", "am", "are", "is",
"mr", "mrs", "mr", "and"]
word = {}
ps = PorterStemmer()
sourceString = sys.argv[1]
cutDirectories = sourceString.split('/')[-1]
pathString = cutDirectories.split('.')[0]
pathString = "cleanbooks/" + pathString + "clean/"
print(sourceString + "\n")
if not os.path.exists('cleanbooks'):
os.makedirs('cleanbooks')
# if not os.path.exists('lexicon'):
# os.makedirs('lexicon')
if not os.path.exists(pathString):
os.makedirs(pathString)
#call(["python", "blacklist.py"])
i=0
skip = 1
with open(sourceString, 'U') as fileIn:
text = fileIn.read()
for paragraph in text.split(2*os.linesep):
if not paragraph:
continue
elif "*** START OF " in paragraph or "*END THE SMALL PRINT" in paragraph:
skip = 0
continue
elif "*** END OF " in paragraph:
fileIn.close()
sys.exit()
elif "End of Project Gutenberg's" in paragraph:
fileIn.close()
sys.exit()
elif "End of the Project Gutenberg" in paragraph:
fileIn.close()
sys.exit()
if not skip:
cleanString = ''
i += 1
fileOut = open("{}{}.txt".format(pathString, i), "w")
for line in paragraph.split(os.linesep):
for tempWord in line.split():
word=cleanWord(tempWord)
if not word:
continue
# temp = fileCheck(word)
#
# if temp == -1:
# continue
# if temp == 0:
temp = morphyTest(word)
if temp:
stem = ps.stem(temp)
if stem and not stem in blacklist:
cleanString = cleanString + ' ' + stem
#if temp == 0:
# catchAll(word)
cleanString = cleanString + os.linesep
if len(cleanString.split(' ')) > 10:
fileOut.write(cleanString)
fileOut.close()
else:
fileOut.close()
os.remove("{}{}.txt".format(pathString, i))
i -= 1
if skip==1:
print(sourceString + " was badly parsed, no output");
No preview for this file type
...@@ -15,7 +15,7 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount); ...@@ -15,7 +15,7 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount);
int main(int argc, char *argv[]){ int main(int argc, char *argv[]){
clock_t begintotal = clock(); clock_t begintotal = clock();
int fileCount = 0; int fileCount = 0;
lexOpen("/home/drbob/Documents/lexicon"); lexOpen("/home/drbob/Documents/lexicon2-25");
sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV)); sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV));
char rootString[2000]; char rootString[2000];
if(argc <2){ if(argc <2){
......
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